Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916359.1_cds_XP_016466068.1_58960
CDS Infomation

[gene=LOC107788851] [db_xref=GeneID:107788851] [protein=HBS1-like protein isoform X2] [protein_id=XP_016466068.1] [location=complement(join(6693..6824,6991..7125,7226..7471,7629..7797,8755..9242,9510..9838,10613..10690,10874..11095,11908..12072,13006..13111))] [gbkey=CDS]
Sequence

ATGCCTCGTAAGGTAAATTATGGAGTTAATTACGAGGAAGATTTTGATGACTATGAAGAT
TATGGTTATGACTGTGATGATGGGTGCGGTTATGCAGAGGAAGATGGTACGCCACCAGAA
ACAAGGTCAAAACAGGAGTTGGATAACGCTGGCGTTTGGCGTTGTCCCATTTGCACTTTT
GATAATGAAGATACTATGAATGCATGTGATATATGTGGAGTGCTTCGTCATCCATTGGTC
AAAAATTGTGCCGGCAGCAAAGAAAATGCAGTTGGTGGCATATGTAAAGATTCTGGAGCA
TCTGTAATGGCGAAGTCTCTGTTTGCATCGCTGCTGCTTCAGAAACCAAAAAAGGCTGTA
AATTTTGAAGCACAGAATTACTCTTTTAAGACTGAAGACTGCTTTAACCTCTACAAGCCT
GGAAATATGTGTGGACATTTTCATGATTTACACACAGCTTTTTGCTCTCAAAGCCATTGC
AAGATTGATATAGTACCTTTCAAGTTTGACCCCCAGTCTCCAGATGATTCAGTACTGAGT
GGAATAATACCATCCAGATTACGTCCCAAAGCTGATACTGACAAGGTCTTACAGTTAAAT
GTCCCATCAAATAACAAACAACTAAGTACTGAAGTTAAAAAAGATTTGGCTGCTGAAGGG
CATCCAAGCTCATACACATCATTAGCAAAAGATGATTTGAAGGATAGTGATTCTTCCTCG
AAAACTAGGGGAAATGATGGTGTTACAAGCAACTTGAATGATATGTCTATATCATCAAAG
CCTCGCAGTGTGGATACTAGAAAGAGTGACAGTGCAACATCAAGCTCAAAGAATAAGCCT
CAGAAAGGTGTACAGCCTCCTCAAAAAGAAGATAACTTCAACCAGTTAAATCTTGCAATT
GGAAAAGGGCCGTTTGCTTATGCTTGGGCATTGGATGAGAGTGCTGAAGAAAGAGAGAGG
GGAATAACTATGACAGTGGGCGTTGCTTACTTTAACACAAAATGTTACCGTGTTGTTCTG
CTTGATTCTCCAGGTCACAGGGACTTTGTCCCAAATATGATATCAGGGGCAACACAAGCA
GATGCAGCAATTCTTGTAATTGATGCTTCAGTAGGTGCATTTGAAGCAGGTATTGATGCT
ACTGGAGGTCAGACGAGGGAGCATGCACAACTTATCAAAAGCTTTGGGGTGGATCAGATT
ATAATTGCTGTTAACAAAATGGACGCAGCGGGATACTCCAAAGAACGATTTAATGCAATT
AAGAAACAATTAGGCACATTTCTCCGTGCTTGTAAGTTTAAAGATTCTTCAGTAGCATGG
ATTCCCGTAAGTGCCATGGAAAACCAAAATTTGGTGACAGGTCCATCAGAAGCACGGTTG
TCATCCTGGTTCCAAGGTCCTTGCCTATTGGATGCAATAGACTCTCTCCAACTTCCTCAA
AGAGATTATTCGAAGCCATTCTTATTGCCGATATGTGATGTTGTAAGGGCACAGTCTCAA
GGACAAGTGTCAATATGCGGTAAGTTGGAGAGGGGAGCTCTTCAAACTGGAAATGAGGTC
CAGGTTTTACTTATGCCATCAAGAGAAATGGCAACGGTGCGTTCTTTGGAACGTGATTCT
CAGGTTTGTAACAGTGCAAAAGCAGGAGACAGTGTCACTATCAACCTACAAGGTATTGAT
GCAAATCACGTGATGGCGGGGGGTGTCTTGTGCCACCCTGAATTTCCTGTTCCAGTTGCA
AATCATTTGGAACTGAAGGTTCTCATCCTGGACAATTCCATTCCAATTTTAATTGGCTCT
CAGTTGGAGTTTCTTGTACACCACGTTAAAGAGGCTGCACGAGTTGTGAGGATTTTGTCA
TTGATTGATCCAAAGACCGGAAAGGAGACCAAGAAATCACCTCGATGTCTTCTGGCAAAG
CAGAATGCTATCATTGAGGTGGTTTTGCAAGGAATGGTTTGCATCGACGAGCATTCTAAT
TGTAAAGCTCTCGGAAGGGTCTCCCTCAGGTCATCTGGAAGAACCGTTGCTCTTGGTCTG
GTGACTAGAATTATAGTGAAGAAGGAATAA

Peptide Sequence

PEP ID

XP_016466068.1
PEP Infomation

PREDICTED: HBS1-like protein isoform X2 [Nicotiana tabacum]
Sequence

MPRKVNYGVNYEEDFDDYEDYGYDCDDGCGYAEEDGTPPETRSKQELDNAGVWRCPICTF
DNEDTMNACDICGVLRHPLVKNCAGSKENAVGGICKDSGASVMAKSLFASLLLQKPKKAV
NFEAQNYSFKTEDCFNLYKPGNMCGHFHDLHTAFCSQSHCKIDIVPFKFDPQSPDDSVLS
GIIPSRLRPKADTDKVLQLNVPSNNKQLSTEVKKDLAAEGHPSSYTSLAKDDLKDSDSSS
KTRGNDGVTSNLNDMSISSKPRSVDTRKSDSATSSSKNKPQKGVQPPQKEDNFNQLNLAI
GKGPFAYAWALDESAEERERGITMTVGVAYFNTKCYRVVLLDSPGHRDFVPNMISGATQA
DAAILVIDASVGAFEAGIDATGGQTREHAQLIKSFGVDQIIIAVNKMDAAGYSKERFNAI
KKQLGTFLRACKFKDSSVAWIPVSAMENQNLVTGPSEARLSSWFQGPCLLDAIDSLQLPQ
RDYSKPFLLPICDVVRAQSQGQVSICGKLERGALQTGNEVQVLLMPSREMATVRSLERDS
QVCNSAKAGDSVTINLQGIDANHVMAGGVLCHPEFPVPVANHLELKVLILDNSIPILIGS
QLEFLVHHVKEAARVVRILSLIDPKTGKETKKSPRCLLAKQNAIIEVVLQGMVCIDEHSN
CKALGRVSLRSSGRTVALGLVTRIIVKKE

Transcript Sequence

Gene sequence data has not been registered.